肠胃炎怎么办
Type 'q()' to quit R.
> library("FactoMineR")
Warning message:
程辑包‘FactoMineR’是⽤R版本3.6.2 来建造的
> library("factoextra")
载⼊需要的程辑包：ggplot2
Welcome! Want to learn more? See two factoextra-related books at goo.gl/ve3WBa Warning message:
程辑包‘factoextra’是⽤R版本3.6.2 来建造的
>
> library(GSEABa)
载⼊需要的程辑包：BiocGenerics
载⼊需要的程辑包：parallel
载⼊程辑包：‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:ba’:
anyDuplicated, append, as.data.frame, baname, cbind, colnames,
dirname, do.call, duplicated, eval, evalq, Filter, Find, get,
grep, grepl, interct, is.unsorted, lapply, Map, mapply, match,
mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position,
rank, rbind, Reduce, rownames, sapply, tdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
载⼊需要的程辑包：Bioba
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browVignettes()'. To cite Bioconductor, e
'citation("Bioba")', and for packages 'citation("pkgname")'.
载⼊需要的程辑包：annotate
载⼊需要的程辑包：AnnotationDbi
载⼊需要的程辑包：stats4
载⼊需要的程辑包：IRanges
载⼊需要的程辑包：S4Vectors
载⼊程辑包：‘S4Vectors’
The following object is masked from ‘package:ba’:
载⼊程辑包：‘IRanges’
The following object is masked from ‘package:grDevices’:
windows
载⼊需要的程辑包：XML
载⼊需要的程辑包：graph
载⼊程辑包：‘graph’
The following object is masked from ‘package:XML’:
addNode
Warning messages:
Warning messages:
1: 程辑包‘IRanges’是⽤R版本3.6.2 来建造的
2: 程辑包‘S4Vectors’是⽤R版本3.6.2 来建造的
> library(GSVA)
> library(clusterProfiler)
Registered S3 method overwritten by 'enrichplot':
method from
clusterProfiler v3.14.3 For help: guangchuangyu.github.io/software/clusterProfiler
If you u clusterProfiler in published rearch, plea cite:
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integra Warning message:
程辑包‘clusterProfiler’是⽤R版本3.6.2 来建造的
> library(ggplot2)
> library(ggpubr)
载⼊需要的程辑包：magrittr
> library(hgu133plus2.db)
Error in library(hgu133plus2.db) :
不存在叫‘hgu133plus2.db’这个名字的程辑包
> library(limma)
载⼊程辑包：‘limma’
The following object is masked from ‘package:BiocGenerics’:
plotMA
> library(db)石风景区
> library(pheatmap)
> BiocManager::install("hgu133plus2.db"),ask = F,update = F)
Error: unexpected ',' in "BiocManager::install("hgu133plus2.db"),"当代作家
> BiocManager::install("hgu133plus2.db")
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'hgu133plus2.db'
installing the source package ‘hgu133plus2.db’
trying URL 'mirrors.ustc.edu/bioc//packages/3.10/data/annotation/src/contrib/hgu133plus2.db_3.2.'
Content type 'application/gzip' length 2139642 bytes (2.0 MB)
downloaded 2.0 MB
* installing *source* package 'hgu133plus2.db' ...
** using staged installation
** R
** inst交通情况
** byte-compile and prepare package for lazy loading
Warning messages:
1: 程辑包'IRanges'是⽤R版本3.6.2 来建造的
2: 程辑包'S4Vectors'是⽤R版本3.6.2 来建造的
** help
*** installing help indices
converting help for package 'hgu133plus2.db'
finding HTML links ... 好了
hgu133plus2ACCNUM html
hgu133plus2ALIAS2PROBE html
hgu133plus2BASE html
hgu133plus2CHR html
hgu133plus2CHRLENGTHS html
hgu133plus2CHRLOC html
hgu133plus2ENSEMBL html
hgu133plus2ENTREZID html
hgu133plus2ENZYME html
hgu133plus2GENENAME html
hgu133plus2GO html
hgu133plus2MAP html
hgu133plus2MAPCOUNTS html
hgu133plus2OMIM html
hgu133plus2ORGANISM html
hgu133plus2PATH html
hgu133plus2PFAM html
hgu133plus2PMID html
hgu133plus2PROSITE html
hgu133plus2PROSITE html
hgu133plus2REFSEQ html
hgu133plus2SYMBOL html
hgu133plus2UNIGENE html
hgu133plus2UNIPROT html
hgu133plus2_dbconn html
** building package indices
** testing if installed package can be loaded from temporary location
Warning: package 'IRanges' was built under R version 3.6.2
Warning: package 'S4Vectors' was built under R version 3.6.2
** testing if installed package can be loaded from final location
Warning: package 'IRanges' was built under R version 3.6.2
Warning: package 'S4Vectors' was built under R version 3.6.2
** testing if installed package keeps a record of temporary installation path
* DONE (hgu133plus2.db)
飞行员一个月工资多少
The downloaded source packages are in
‘C:\Windows\Temp\Rtmp4eiPX2\downloaded_packages’
Old packages: 'doRNG', 'GenomicFeatures', 'gmp', 'lpSolve', 'metap', 'Rcpp',
'rlang', 'scater', 'sn', 'stringi', 'tidyr', 'tidylect', 'TSP', 'xts',
'zoo', 'annotate', 'AnnotationDbi', 'BH', 'bibtex', 'Bioba',
'BiocGenerics', 'BiocManager', 'BiocParallel', 'BiocVersion', 'biocViews',
'bit', 'blob', 'boot', 'broom', 'callr', 'caTools', 'cli',
'clusterProfiler', 'covr', 'curl', 'data.table', 'DBI', 'DelayedArray',
'digest', 'doFuture', 'DOSE', 'DT', 'edgeR', 'enrichplot',
'exactRankTests', 'fansi', 'farver', 'fga', 'foreign', 'future',
'future.apply', 'geneplotter', 'GenomeInfoDb', 'GenomeInfoDbData',
'GenomicRanges', 'ggpubr', 'ggridges', 'gh', 'globals', 'GO.db',
'GOSemSim', 'gplots', 'graph', 'GSEABa', 'GSVA', 'hexbin', 'hms',
'HSMMSingleCell', 'igraph', 'IRanges', 'KernSmooth', 'knitr', 'leiden',
'limma', 'listenv', 'MASS', 'Matrix', 'mgcv', 'mime', 'monocle',
'mvtnorm', 'nlme', 'db', 'pillar', 'plotly', 'plyr',
'prettyunits', 'purrr', 'qvalue', 'R.oo', 'R.utils', 'R6', 'RBGL',
'RcppAnnoy', 'RcppArmadillo', 'RcppEigen', 'RCurl', 'Rdpack',
'reticulate', 'roxygen2', 'RSpectra', 'RSQLite', 'rvcheck', 'rversions',
'S4Vectors', 'scales', 'sctransform', 'SDMTools', 'Seurat', 'SingleR',
'singscore', 'slam', 'SummarizedExperiment', 'survival', 'testthat',
'uwot', 'VGAM', 'xfun', 'XML', 'XVector', 'zlibbioc'
Update all/some/none? [a/s/n]:
n
> library("KEGG.db")
Error in library("KEGG.db") : 不存在叫‘KEGG.db’这个名字的程辑包
> library(KEGG.db)
Error in library(KEGG.db) : 不存在叫‘KEGG.db’这个名字的程辑包
> BiocManager::install("KEGG.db",ask = F,update = F)
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'KEGG.db'
installing the source package ‘KEGG.db’
trying URL 'mirrors.ustc.edu/bioc//packages/3.10/data/annotation/src/contrib/KEGG.db_3.2.'
Content type 'application/gzip' length 1976342 bytes (1.9 MB)
downloaded 1.9 MB
* installing *source* package 'KEGG.db' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning messages:
1: 程辑包'IRanges'是⽤R版本3.6.2 来建造的
吃货眼中的中国
2: 程辑包'S4Vectors'是⽤R版本3.6.2 来建造的
Warning in tools:::makeLazyLoading("KEGG.db", "C:/Urs/wlx/Documents/R/win-library/3.6/00LOCK-KEGG.db/00new", ：程辑包已经使⽤延迟加载了
** help
*** installing help indices
converting help for package 'KEGG.db'
finding HTML links ... 好了
KEGGBASE html
KEGGENZYMEID2GO html
KEGGEXTID2PATHID html
KEGGGO2ENZYMEID html
KEGGMAPCOUNTS html
KEGGPATHID2EXTID html
KEGGPATHID2NAME html
KEGGPATHNAME2ID html
KEGG_dbconn html
** building package indices
** testing if installed package can be loaded from temporary location
Warning: package 'IRanges' was built under R version 3.6.2
Warning: package 'S4Vectors' was built under R version 3.6.2
** testing if installed package can be loaded from final location
Warning: package 'IRanges' was built under R version 3.6.2
Warning: package 'S4Vectors' was built under R version 3.6.2
** testing if installed package keeps a record of temporary installation path
* DONE (KEGG.db)
The downloaded source packages are in
‘C:\Windows\Temp\Rtmp4eiPX2\downloaded_packages’
> library(KEGG.db)
KEGG.db contains mappings bad on older data becau the original
resource was removed from the the public domain before the most
recent update was produced. This package should now be considered
deprecated and future versions of Bioconductor may not have it
2004是什么年available. Urs who want more current data are encouraged to
look at the KEGGREST or reactome.db packages
> library(GSEABa)
> library(GEOquery)
Error in library(GEOquery) : 不存在叫‘GEOquery’这个名字的程辑包
> BiocManager::install("GEOquery")
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'GEOquery'
trying URL 'mirrors.ustc.edu/bioc//packages/3.10/bioc/bin/windows/contrib/3.6/GEOquery_
2.54.1.zip' Content type 'application/zip' length 13850910 bytes (13.2 MB)
downloaded 13.2 MB
package ‘GEOquery’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Windows\Temp\Rtmp4eiPX2\downloaded_packages
Old packages: 'doRNG', 'GenomicFeatures', 'gmp', 'lpSolve', 'metap', 'Rcpp',
'rlang', 'scater', 'sn', 'stringi', 'tidyr', 'tidylect', 'TSP', 'xts',
'zoo', 'annotate', 'AnnotationDbi', 'BH', 'bibtex', 'Bioba',
'BiocGenerics', 'BiocManager', 'BiocParallel', 'BiocVersion', 'biocViews',
'bit', 'blob', 'boot', 'broom', 'callr', 'caTools', 'cli',
'clusterProfiler', 'covr', 'curl', 'data.table', 'DBI', 'DelayedArray',
运动剪影
'digest', 'doFuture', 'DOSE', 'DT', 'edgeR', 'enrichplot',
'exactRankTests', 'fansi', 'farver', 'fga', 'foreign', 'future',
'future.apply', 'geneplotter', 'GenomeInfoDb', 'GenomeInfoDbData',
'GenomicRanges', 'ggpubr', 'ggridges', 'gh', 'globals', 'GO.db',
'GOSemSim', 'gplots', 'graph', 'GSEABa', 'GSVA', 'hexbin', 'hms',
'HSMMSingleCell', 'igraph', 'IRanges', 'KernSmooth', 'knitr', 'leiden',
'limma', 'listenv', 'MASS', 'Matrix', 'mgcv', 'mime', 'monocle',
'mvtnorm', 'nlme', 'db', 'pillar', 'plotly', 'plyr',
'prettyunits', 'purrr', 'qvalue', 'R.oo', 'R.utils', 'R6', 'RBGL',
'RcppAnnoy', 'RcppArmadillo', 'RcppEigen', 'RCurl', 'Rdpack',
'reticulate', 'roxygen2', 'RSpectra', 'RSQLite', 'rvcheck', 'rversions',
'S4Vectors', 'scales', 'sctransform', 'SDMTools', 'Seurat', 'SingleR',
'singscore', 'slam', 'SummarizedExperiment', 'survival', 'testthat',
'uwot', 'VGAM', 'xfun', 'XML', 'XVector', 'zlibbioc'
Update all/some/none? [a/s/n]:
Update all/some/none? [a/s/n]:
n
> library(limma)
> library(impute)
> library(db)
> library(hgu133plus2.db)
> library(BiocManager)
Bioconductor version 3.10 (BiocManager 1.30.10), ?BiocManager::install for
help
Warning message:
程辑包‘BiocManager’是⽤R版本3.6.2 来建造的
> library(WGCNA)
Error in library(WGCNA) : 不存在叫‘WGCNA’这个名字的程辑包
