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Appl. Environ. Microbiol. 76(1):1-22. .MICROBIOLOGY: 2010 INSTRUCTIONS TO AUTHORS APPLIED AND ENVIRONMENTAL
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INSTRUCTIONS TO AUTHORS
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MICROBIOLOGY: 2010
APPLIED AND ENVIRONMENTAL
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APPLIED AND ENVIRONMENTAL MICROBIOLOGY
2010INSTRUCTIONS TO AUTHORS*
SCOPE
充电速度
Applied and Environmental Microbiology (AEM)pub-lishes descriptions of all aspects of applied microbial rearch,basic rearch on microbial ecology,and rearch of a genetic and molecular nature that fo-cus on microbial topics of practical value.Rearch must address salient microbiological principles,fun-damental microbial process,or basic questions in applied or environmental microbiology.Topics that are considered include microbiology in relation to foods,agriculture,industry,biotechnology,public health,plants,and invertebrates and basic biological properties of bacteria,fungi,algae,protozoa,and other simple eukaryotic organisms as related to mi-crobial ecology.Manuscripts should report new and significant findings that advance the understanding of microbiology and upon which other scientists may build.To best rve its readership,the journal must accept only tho papers that are most significant to the field of applied and environmental microbiology.Thus,the editors will reject manuscripts that,while scientifically sound,reprent only incremental exten-sions of other studies,are mainly confirmatory,or do not pursue a question in sufficient depth.
The biodegradation ction describes novel microbial process for alteration,removal,or utilization of envi-ronmental or anthropogenic chemicals.
Papers in the biotechnology ction describe the u and modification of organisms in order to achieve so-cially beneficial objectives.
The environmental microbiology ction covers manuscripts that focus on rearch related to microor-ganisms in the environment.This is distinct from the microbial ecology ction,which focus on ecological relationships,such as interactions among organisms,their structure and functional role in an ecosystem,and community level studies.Thus,the environmental mi-crobiology ction features articles that focus on specific organisms in the environment,rather than a whole com-munity,as well as tho in which the study is not focud on implied or stated underlying ecological relationships.The enzymology and protein engineering ction cov-ers the structure and function of environmentally or industrially significant proteins and how they can be modified to achieve practical catalytic objectives.
Included in the evolutionary and genomic microbiol-ogy ction are papers detailing newly described evolu-tionary process and evolutionary relationships among microorganisms.Topics include geno
叶字组词mic analysis of es-tablished microorganisms and metagenomic investiga-tion of microbial populations in the environment.
The food microbiology ction covers manuscripts dealing with all aspects of food microbiology,including microbial food safety,microbial ecology of foods,pre-dictive food microbiology,probiotics,food fermenta-tions,and food spoilage.
The genetics and molecular biology ction includes papers describing genetic organization,expression,mu-tation,and repair in organisms with environmental or practical significance.
Manuscripts for the geomicrobiology ction must em-phasize the role of microorganisms in geobiochemical process in terrestrial or aquatic ecosystems,including subsurface,aquifer,and oceanic environments.Topics include mineralization,the u of inorganic ions in en-ergy metabolism,and growth in extreme environments.Manuscripts focud on geological process with only marginal links to microbiology will not qualify for AEM.Invertebrate microbiology manuscripts should address interactions between invertebrates and microorganisms,ranging from commensalism and mutualism to parasit-ism and pathogenicity.Manuscripts describing work dealing with the metab
olites or toxins from animal,plant,or inct cells or the physiology of such cells are not suitable for AEM unless the work concerns a micro-bial community or individual microorganisms.
New microbiological methods must provide novel avenues to address fundamental biological questions and will be considered for publication in AEM when accompanied by a demonstrated application.Descrip-tions of the application of previously described technol-ogies,including the cloning,amplification,and expres-sion of “foreign”genes,to a new genus or species of microbe will generally not be considered for indepen-dent publication.Manuscripts that describe the con-struction of engineered strains for innovative process application,development,or enhancement must prent results to authenticate the utility,superiority,and uniqueness of such strains.
The microbial ecology ction covers a wide range of topics on the ecology of microorganisms,including cul-ture-independent molecular asssments that provide new insights into (i)the structure-function relationships of microorganisms,(ii)the impact of in situ conditions on community structure,or (iii)the effect of changes in microbial community composition on ecosystem func-tion.Archival phylogenetic snapshots that do not pro-vide such insights are not acceptable for publication in AEM.
Manuscripts submitted to the mycology ction should be clearly of a microbiological nature and may deal with basic biology,biochemistry,genetics,or physiology of fungi,molds,yeasts,or algae.Papers dealing purely with taxonomy or phylogeny,with fungal or algal structure,or
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with metabolism/alteration of metabolites/toxins by ani-mal,plant,or inct cells,tissues,or organisms
著名画家有哪些are not suitable.Documentation of the distribution/occurrence of toxins or metabolites in natural samples(foods,cere-als,grains,and soils,etc.)is suitable if the work includes studies involving the isolation,occurrence,or enumera-tion of the responsible microbes in the samples.The chemical or biochemical elucidation of metabolite or toxin structures is suitable if the work includes aspects of the enzymology or biosynthesis of the compounds. The physiology ction address questions about how organisms adapt to changes in their environment,in-cluding bioenergetics,stress,starvation,metabolic chal-lenges,and respons to nutritional variation.
The plant microbiology ction covers manuscripts dealing with all aspects of plant-microorganism interac-tions,including symbiotic and rhizosphere bacteria and phytopathogenic microorganisms.
The public health microbiology ction focus on manuscripts that describe the various aspects of the be-havior of environmentally transmitted microorganisms that cau human dia.The include,but are not limited to,microorganisms transmitted through water, air,soil,and/or environmental surfaces.
ASM publishes a number of different journals cover-ing various aspects of thefield of microbiology.Each journal has a prescribed scope which must be considered in determining the most appropriate journal for each manuscript.The following guidelines may be of assis-tance.
(i)AEM will consider manuscripts describing proper-ties of enzymes and proteins that are produced by either wild-type or genetically engineered microorganisms and that are significant or have potential significance in in-dustrial or environmental ttings.Studies dealing with basic biological phenomena of enzymes or proteins or in which enzymes have been ud in investigations of basic biological functions are more appropriate for the Journal of Bacteriology.
(ii)AEM will consider papers which describe the u of antimicrobial agents as tools for elucidating aspects of applied and environmental microbiology.Other papers dealing with antimicrobial agents,including manuscripts dealing with the biosynthesis and metabolism of such agents,are more appropriate for Antimicrobial Agents and Chemotherapy.
(iii)AEM will consider manuscripts that concern bacte-riophages or other virus in relation to the environment, public health,or industrial microbiology.Papers that pri-marily concern attachment and intracellular replication of virus,virus interactions with host metabolism,virus struc-ture,or virus genomics are more appropriate for the Jour-nal of Bacteriology or the Journal of Virology.
(iv)Manuscripts dealing with the immune system or with topics of basic medical interest or oral microbiology are more appropriate for Infection and Immunity.Re-ports of clinical investigations and
environmental biol-ogy applied to hospitals should be submitted to the Jour-nal of Clinical Microbiology.
(v)AEM and Eukaryotic Cell(EC)accept manuscripts on population dynamics and the ecology of eukaryotic microbes.Studies of microbial communities and of mi-crobial populations with identified economic or ecolog-ical signifi,plant pathogens or symbionts,are usually more appropriate for AEM.Studies of single species of eukaryotes,especially“model”organisms or tho without identified economic or ecological impor-tance,are usually more appropriate for EC.
角色转变(vi)Manuscripts dealing with the purification and characterization of enzymes or cloning of genes that have already been extensively described for other or-ganisms will be considered for publication only if they offer experimentally supported new insights into the biological role,properties,or applications of the enzymes.Descriptions of genes or enzymes that differ only in minor ways from the prototypes are not suit-able for AEM.
Questions about the guidelines may be directed to the editor in chief of the journal being considered.
If transfer to another ASM journal is recommended by an editor,the corresponding author will be cont
acted. Note that a manuscript rejected by one ASM journal on scientific grounds or on the basis of its general suit-ability for publication is considered rejected by all other ASM journals.
EDITORIAL POLICY
U of Microbiological Information
The Council Policy Committee(CPC)of the Ameri-can Society for Microbiology affirms the long-standing position of the Society that microbiologists will work for the proper and beneficent application of science and will call to the attention of the public or the appropriate authorities misus of microbiology or of information derived from microbiology.ASM members are obligated to discourage any u of microbiology contrary to the welfare of humankind,including the u of microbes as biological weapons.Bioterrorism violates the fundamen-tal principles expresd in the Code of Ethics of the Society and is abhorrent to ASM and its members. ASM recognizes that there are valid concerns regard-ing the publication of information in scientific journals that could be put to inappropriate u as described in the CPC resolution mentioned above.Members of the ASM Publications Board will evaluate the rare manuscript that might rai such issues during the review process. However,as indicated elwhere in the Instructions, rearch articles must contain suffici
ent detail,and material/information must be made available,to permit the work to be repeated by others.Supply of ma-terials should be in accordance with laws and regula-tions governing the shipment,transfer,posssion,and u of biological materials and must be for legitimate, bonafide rearch needs.Links to,and information re-garding,the laws and regulations can be found at
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www.asm/under the Public Policy tab.We ask that authors pay particular attention to the NSAR Select Agent/Toxin list on the CDC website www .v/index.html and the NSABB criteria for identifying dual u rearch of concern in the report “Propod Framework for the Oversight of Dual U Life Sciences Rearch:Strategies for Minimizing the Potential Misu of Rearch Information”on the Office of Biotechnology Activities website oba.v /biocurity/(pages17–22).
Ethical Guidelines
Authors are expected to adhere to the highest ethical standards.The following ctions of the Instructions include detailed information about ASM’s ethical stan-dards.Failure to comply with the policies described in the Instructions may result in a letter of reprimand,a suspension of publishing privileges in ASM journals, and/or notification of the authors’institutions.Authors employed by companies who policies do not permit them to comply with the ASM policies may be sanc-tioned as individuals and/or ASM may refu to consider manuscripts having authors from such companies.The ASM Publications Board wishes to clarify the following in particular.
Plagiarism.Misappropriating another person’s intel-lectual property constitutes plagiarism.This includes copy-ing ntences or paragraphs verbatim(or almost verbatim) from someone el’s work,even if the original work is cited in the references.The NIH ORI publication“Avoiding Plagiarism,Self-Plagiarism,and Other Questionable Writ-ing Practices:a Guide to Ethical Writing”(ori.dhhs .gov/education/products/plagiarism/)can help authors identify questionable writing practices.
Plagiarism is not limited to the text;it can involve any part of the manuscript,includingfigures and tables,in which material is copied from another publication with-out permission and attribution.An author may not reu his or her own previously published work without attri-bution;this is considered
lf-plagiarism.
Primary publication.Manuscripts submitted to the journal must reprent reports of original rearch,and the original data must be available for review by the editor if necessary.
By submission of a manuscript to the journal,the authors guarantee that they have the authority to publish the work and that the manuscript,or one with substan-tially the same content,was not published previously,is not being considered or published elwhere,and was not rejected on scientific grounds by another ASM jour-nal.It is incumbent upon the author to acknowledge any prior publication,including his/her own articles,of the data contained in a manuscript submitted to an ASM journal.A copy of the relevant work should be submitted with the paper as supplemental material.Whether the material constitutes the substance of a paper and there-fore renders the manuscript unacceptable for publica-tion is an editorial decision.
In brief,a paper is not acceptable for submission to an ASM journal if it,or its substance,has been published/ posted in:
•A rial,periodical,or book
•A conference report or symposium proceedings团员教育评议自我评价
•A technical bulletin or company white paper
•A nonpersonal website
•Any other retrievable source
The following do not preclude submission to,or pub-lication by,an ASM journal,as long as the posted data do not constitute the substance of a submission:•Posting of a method/protocol on a nonpersonal website
•Posting of a limited amount of original data on a personal/university/corporate website or websites of small collaborative groups working on a problem •Posting of unpublished quence data on the Inter-net(the URL where the quence is posted should be included in the text)
•Preliminary disclosures of rearchfindings as meeting posters,webcast as meeting prentations, or published in abstract form as adjuncts to a ,part of a program
•Posting of thes and disrtations on a personal/ university-hosted website
Availability of materials.By publishing in the jour-nal,the authors agree that,subject to requirements o
r limitations impod by laws or governmental regulations of the United States,any DNAs,virus,microbial strains,mutant animal strains,cell lines,antibodies,and similar materials newly described in the article are avail-able from a national collection or will be made available in a timely fashion,at reasonable cost,and in limited quantities to members of the scientific community for noncommercial purpos.The authors guarantee that they have the authority to comply with this policy either directly or by means of material transfer agreements through the owner.
Similarly,the authors agree to make available com-puter programs,originating in the authors’laboratory, that are the only means of confirming the conclusions reported in the article but that are not available com-mercially.The program(s)and suitable documentation regarding its(their)u may be provided by any of the following means:(i)as a program transmitted via the Internet,(ii)as an Internet rver-bad tool,or(iii)as a compiled or asmbled form on a suitable medium (e.g.,magnetic or optical).It is expected that the mate-rial will be provided in a timely fashion and at reason-able cost to members of the scientific community for noncommercial purpos.The authors guarantee that they have the authority to comply with this policy either directly or by means of material transfer agreements through the owner.
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Permissions.The corresponding author is responsi-ble for obtaining permission from both the original au-thor and the original ,the copyright owner)to reproduce or modifyfigures(including maps) and tables and to reproduce text(in whole or in part) from previous publications.
Permission(s)must be obtained no later than the modification stage.The original signed permission(s) must be identified as to the relevant item in the ASM ,“permissions for Fig.1in AEM00123-10”)and submitted to the ASM production editor on request.In addition,a statement indicating that the ma-terial is being reprinted with permission must be in-cluded in the relevantfigure legend or table footnote of the manuscript.Reprinted text must be enclod in quo-tation marks,and the permission statement must be included as running text or indicated parenthetically. It is expected that the authors will provide written assurance that permission to cite unpublished data or personal communications has been granted.For supple-mental material intended for posting by ASM(e“Sup-plemental Material”),if the authors of the AEM manu-script are not also the owners of the supplemental material,the corresponding author must nd to ASM signed
permission from the copyright owner that allows posting of the material,as a supplement to the article,by ASM.The corresponding author is also responsible for incorporating in the supplemental material any copy-right notices required by the owner.
Authorship.All authors of a manuscript must have agreed to its submission and are responsible for its content(initial submission and any subquent ver-sions),including appropriate citations and acknowledg-ments,and must also have agreed that the correspond-ing author has the authority to act on their behalf in all matters pertaining to publication of the manuscript.The corresponding author is responsible for obtaining such agreements and for informing the coauthors of the manuscript’s status throughout the submission,review, and publication process.Submitting a paper before all coauthors have read and approved it is considered an ethical violation,as is failure to credit someone who qualifies as a coauthor;however,ASM does not itlf investigate or attempt to resolve authorship disputes. An author is one who made a substantial contribution to the overall design and execution of the experiments; therefore,ASM considers all authors responsible for the entire paper.Individuals who provided assistance, e.g.,supplied strains or reagents or critiqued the paper, need not be listed as authors but may be recognized in the Acknowledgments ction.
A study group,surveillance team,working group,con-sortium,or the ,the Active Bacterial Core
Sur-veillance Team)may be listed as a coauthor in the byline if its contributing members satisfy the requirements for authorship and accountability as described in the In-structions.The names(and institutional affiliations,if desired)of the contributing members only may be given in a footnote linked to the study group name in the byline or as a parate paragraph in the Acknowledg-ments ction.
If the contributing members of the group associated with the work do not fulfill the criteria of substantial contribution to and responsibility for the paper,the group may not be listed in the author byline.Instead,it and the names of its contributing members may be listed in the Acknowledgments ction.
All authors must agree to the order in which their names are listed in the byline.Statements regarding equal contributions by two or more ,X.J. and ibuted )are permitted as footnotes to bylines and must be agreed to by all of the authors.Other statements of attribution may be in-cluded in the Acknowledgments ction.
A change in authorship(order of listing,addition or deletion of a name,or corresponding author designa-tion)after submission of the manuscript will be imple-mented only after receipt of signed statements of agree-ment from all parties involved.
Disputes about authorship may delay or prevent re-view and/or publication of the manuscript.Should the individuals involved be unable to reach an accord,re-view and/or publication of the manuscript can proceed only after the matter is investigated and resolved by the authors’institution(s)and an official report of such and signed statements of agreement are provided to ASM. Conflict of interest.All authors are expected to dis-clo,in the manuscript submittal letter,any commercial affiliations as well as consultancies,stock or equity in-terests,and patent-licensing arrangements that could be considered to po a conflict of interest regarding the submitted manuscript.(Inclusion of a company name in the author address lines of the manuscript does not constitute disclosure.)Details of the disclosure to the editor will remain confidential.However,it is the re-sponsibility of authors to provide,in the Acknowledg-ments ction,a general statement disclosingfinancial or other relationships that are relevant to the study.Exam-ples of potentially conflicting interests that should be disclod include relationships that might detract from an author’s objectivity in prentation of study results and interests who value would be enhanced by the results prented.All funding sources for the project, institutional and corporate,should be credited in the Acknowledgments ction,as described below.In addi-tion,if a manuscript concerns a commercial product,the manufacturer’s name must be indicated in the Materials and Methods ction or elwhere in the text,as appro-priate,in an obvious manner.
Copyright
To maintain and protect the Society’s ownership and rights and to continue to afford scientists the opportunity to publish in high-quality journals,ASM requires the corresponding author to sign a copyright transfer agree-ment on behalf of all the authors on acceptance.Unless
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