NCBI注释说明

更新时间:2023-05-06 01:14:31 阅读: 评论:0

GeneBank序列注释说明
GeneBank格式的序列中,有一些注释很难弄明白它的意思,通过搜索,终于找到了其原始的解释说明。
现以NM_005715为一个简单的例子(##后面为说明)。
LOCUS      NM_005715              4396 bp    mRNA    linear  PRI 27-JUN-2012    ##说明accession num、序列长度和最后更新日期
DEFINITION  Homo sapiens uronyl-2-sulfotransfera (UST), mRNA.            ##序列所在基因功能描述
ACCESSION  NM_005715                ##accession num
VERSION    NM_005715.2  GI:194578911      ##accession版本号和所在基因GI号
KEYWORDS    .
SOURCE      Homo sapiens (human)        ##序列来源,即序列所在物种
  ORGANISM  Homo sapiens            ##序列物种生物学分类
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE  1  (bas 1 to 4396)          ##参考文献序号
  AUTHORS  Uher,R., Perroud,N., Ng,M.Y., Haur,J., Henigsberg,N., Maier,W.,            ##参考文献作者
            Mors,O., Placentino,A., Rietschel,M., Souery,D., Zagar,T.,
            Czerski,P.M., Jerman,B., Larn,E.R., Schulze,T.G., Zobel,A.,
            Cohen-Woods,S., Pirlo,K., Butler,A.W., Muglia,P., Barnes,M.R.,
            Lathrop,M., Farmer,A., Breen,G., Aitchison,K.J., Craig,I.,
            Lewis,C.M. and McGuffin,P.
  TITLE    Genome-wide pharmacogenetics of antidepressant respon in the    ##参考文献标题
            GENDEP project
  JOURNAL  Am J Psychiatry 167 (5), 555-564 (2010)                          ##参考文献发表的杂志
  PUBMED  20360315                ##在pubmed数据库中序号
  REMARK    GeneRIF: Clinical trial and genome-wide association study of
            gene-dia association, gene-environment interaction, and
            pharmacogenomic / toxicogenomic. (HuGE Navigator)
REFERENCE  2  (bas 1 to 4396)
  AUTHORS  Trynka,G., Zhernakova,A., Romanos,J., Franke,L., Hunt,K.A.,
            Turner,G., Bruinenberg,M., Heap,G.A., Platteel,M., Ryan,A.W., de
            Kovel,C., Holmes,G.K., Howdle,P.D., Walters,J.R., Sanders,D.S.,
            Mulder,C.J., Mearin,M.L., Verbeek,W.H., Trimble,V., Stevens,F.M.,
            Kelleher,D., Barisani,D., Bardella,M.T., McManus,R., van Heel,D.A.
            and Wijmenga,C.
  TITLE    Coeliac dia-associated risk variants in TNFAIP3 and REL
            implicate altered NF-kappaB signalling
  JOURNAL  Gut 58 (8), 1078-1083 (2009)
  PUBMED  19240061
  REMARK    GeneRIF: Obrvational study of gene-dia association. (HuGE
            Navigator)
REFERENCE  3  (bas 1 to 4396)
  AUTHORS  Xu,D., Song,D., Pedern,L.C. and Liu,J.
  TITLE    Mutational study of heparan sulfate 2-O-sulfotransfera and
            chondroitin sulfate 2-O-sulfotransfera
  JOURNAL  J. Biol. Chem. 282 (11), 8356-8367 (2007)
  PUBMED  17227754
  REMARK    GeneRIF: analysis of differences and similarities various residues
            play in the biological roles of the HS-2OST and CS-2OST enzymes
REFERENCE  4  (bas 1 to 4396)
  AUTHORS  Ohtake,S., Kimata,K. and Habuchi,O.
  TITLE    Recognition of sulfation pattern of chondroitin sulfate by uronosyl
            2-O-sulfotransfera
  JOURNAL  J. Biol. Chem. 280 (47), 39115-39123 (2005)
  PUBMED  16192264
  REMARK    GeneRIF: 2OST transfers sulfate preferentially to the GlcA residue
            located in a unique quence, -GalNAc(4SO(4))-GlcA-GalNAc(6SO(4))-.
REFERENCE  5  (bas 1 to 4396)
  AUTHORS  Mungall,A.J., Palmer,S.A., Sims,S.K., Edwards,C.A., Ashurst,J.L.,
            Wilming,L., Jones,M.C., Horton,R., Hunt,S.E., Scott,C.E.,
…………
  TITLE    The DNA quence and analysis of human chromosome 6
  JOURNAL  Nature 425 (6960), 805-811 (2003)
  PUBMED  14574404
REFERENCE  6  (bas 1 to 4396)
  AUTHORS  Kobayashi,M., Sugumaran,G., Liu,J., Shworak,N.W., Silbert,J.E. and
            Ronberg,R.D.
  TITLE    Molecular cloning and characterization of a human uronyl
            2-sulfotransfera that sulfates iduronyl and glucuronyl residues
            in dermatan/chondroitin sulfate
  JOURNAL  J. Biol. Chem. 274 (15), 10474-10480 (1999)
  PUBMED  10187838
COMMENT    VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference quence was derived from
            AI570697.1, DB496757.1, BC093668.1, AB020316.1 and CA842761.1.

本文发布于:2023-05-06 01:14:31,感谢您对本站的认可!

本文链接:https://www.wtabcd.cn/fanwen/fan/82/536177.html

版权声明:本站内容均来自互联网,仅供演示用,请勿用于商业和其他非法用途。如果侵犯了您的权益请与我们联系,我们将在24小时内删除。

标签:序列   参考文献   说明   原始   物种   序号   搜索
相关文章
留言与评论(共有 0 条评论)
   
验证码:
推荐文章
排行榜
Copyright ©2019-2022 Comsenz Inc.Powered by © 专利检索| 网站地图